High-Protein Pepperoni Breakfast Cups

Featured in: Bite-Size Snacks

These savory breakfast cups combine the classic flavors of pepperoni pizza with a protein-rich egg base. Each fluffy frittata features mini pepperoni, melted mozzarella, Parmesan, and vegetables baked in individual portions. The Greek yogurt adds creaminess while keeping the texture light and airy.

Ready in 35 minutes, these cups make excellent meal prep for busy weekdays. Simply bake a batch, store them in the refrigerator, and reheat whenever you need a quick, satisfying morning meal. The individual portions are perfect for breakfast on the go or served alongside fresh fruit.

Customize easily by swapping turkey pepperoni, adding vegetables like spinach or mushrooms, or adjusting the cheese blend. Each cup delivers 10 grams of protein with only 3 grams of carbohydrates, making them ideal for high-protein or low-carb lifestyles.

Updated on Sun, 08 Feb 2026 21:29:05 GMT
Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, each cup overflowing with bubbly mozzarella and a sprinkle of Italian herbs.  Save to Pinterest
Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, each cup overflowing with bubbly mozzarella and a sprinkle of Italian herbs. | funcockts.com

Imagine starting your morning with the savory, comforting flavors of a classic pizza, but in a form that fuels your body for a productive day. These High-Protein Pepperoni Breakfast Cups are the ultimate solution for anyone craving a hearty, low-carb breakfast that doesn't skimp on taste. By combining fluffy eggs with zesty pepperoni and melted mozzarella, you create a protein-packed meal that feels like a morning indulgence.

Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, each cup overflowing with bubbly mozzarella and a sprinkle of Italian herbs.  Save to Pinterest
Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, each cup overflowing with bubbly mozzarella and a sprinkle of Italian herbs. | funcockts.com

The secret to the incredible texture of these breakfast cups is the addition of Greek yogurt and a splash of milk to the egg base. This combination creates a light, airy frittata that serves as the perfect canvas for the bold pizza roll filling. Whether you're serving them at a weekend brunch or grabbing one on your way out the door, these cups are guaranteed to be a crowd-pleaser.

Ingredients

  • 8 large eggs
  • 1/2 cup Greek yogurt (plain, nonfat or 2%)
  • 1/4 cup whole milk
  • 1/2 tsp kosher salt
  • 1/4 tsp freshly ground black pepper
  • 3/4 cup mini pepperoni slices (or regular pepperoni, chopped)
  • 1 cup shredded mozzarella cheese
  • 1/4 cup grated Parmesan cheese
  • 1/2 cup pizza sauce
  • 1/4 cup diced bell pepper (red or green)
  • 1/4 cup finely diced red onion
  • 1/2 tsp dried Italian herbs (basil, oregano, thyme)
Product image
Toast bread, bagels, and sourdough evenly for breakfast, sandwiches, and quick meal prep.
Check price on Amazon

Instructions

Step 1
Preheat your oven to 375°F (190°C). Lightly grease a 12-cup muffin tin with nonstick spray or oil.
Step 2
In a large bowl, whisk together eggs, Greek yogurt, milk, salt, and pepper until smooth and well combined.
Step 3
In a separate bowl, mix mini pepperoni, mozzarella, Parmesan, pizza sauce, bell pepper, red onion, and Italian herbs.
Step 4
Divide the pizza roll filling evenly among the muffin cups.
Step 5
Pour the egg mixture over the filling in each muffin cup, filling each about 3/4 full.
Step 6
Gently stir each cup with a fork to distribute the filling throughout the egg base.
Step 7
Bake for 18–22 minutes, or until the frittatas are puffed, set, and lightly golden on top.
Step 8
Let cool in the tin for 5 minutes, then run a knife around the edges and carefully remove. Serve warm.

Zusatztipps für die Zubereitung

To ensure the egg cups don't stick, make sure to grease the muffin tin thoroughly or use high-quality silicone liners. If the Greek yogurt is cold, whisk it vigorously with a small amount of the milk first to create a smooth paste before adding the remaining eggs to avoid small white lumps in the finished product.

Varianten und Anpassungen

You can easily customize these cups to suit your preferences. Try using turkey pepperoni or finely chopped cooked sausage for a different protein profile. If you want to add more vegetables, chopped spinach, sautéed mushrooms, or black olives make excellent additions to the pizza filling.

Serviervorschläge

Serve these warm with a side of extra pizza sauce for dipping to enhance that authentic pizza experience. They also pair beautifully with a simple side salad or some fresh avocado slices for a complete and balanced low-carb meal.

A close-up of High-Protein Pepperoni Breakfast Cups shows the fluffy egg texture studded with diced red peppers and savory pepperoni slices.  Save to Pinterest
A close-up of High-Protein Pepperoni Breakfast Cups shows the fluffy egg texture studded with diced red peppers and savory pepperoni slices. | funcockts.com

With their perfect balance of protein, healthy fats, and iconic pizza flavors, these High-Protein Pepperoni Breakfast Cups are sure to become a new favorite in your kitchen. They prove that healthy eating can be both delicious and convenient, giving you the perfect start to any day.

Product image
Keep spatulas, spoons, and cooking tools organized and within reach while preparing meals.
Check price on Amazon

Recipe Questions & Answers

Can I freeze these breakfast cups?

Yes, these freeze beautifully for up to 2 months. Let them cool completely, wrap individually in plastic wrap, then store in a freezer-safe bag. Thaw overnight in the refrigerator and reheat in the microwave for 1-2 minutes.

What can I substitute for Greek yogurt?

Sour cream, cottage cheese blended until smooth, or additional milk work as alternatives. For a dairy-free option, use unsweetened coconut yogurt or simply increase the milk by 1/4 cup.

How do I know when they're fully baked?

The cups are done when they're puffed and set in the center—no liquid egg should remain. A knife inserted into the center should come out clean. They'll also develop a light golden color on top.

Can I make these vegetarian?

Absolutely. Replace the pepperoni with diced vegetables like mushrooms, spinach, bell peppers, or sun-dried tomatoes. You could also use vegetarian sausage crumbles or plant-based pepperoni alternatives.

Why add Greek yogurt to eggs?

Greek yogurt adds protein and creates an exceptionally creamy, tender texture. Its tanginess balances the rich cheese and savory pepperoni while keeping the frittata fluffy rather than dense or rubbery.

How long do these last in the refrigerator?

Store cooled cups in an airtight container for up to 4 days. For best texture, reheat gently in the microwave at 50% power or in a 350°F oven for 5-7 minutes until warmed through.

High-Protein Pepperoni Breakfast Cups

Protein-packed cups with pepperoni, mozzarella, and fluffy eggs baked in muffin tins. Perfect for meal prep mornings.

Prep Duration
15 minutes
Cook Duration
20 minutes
Overall Time
35 minutes
Authored by Funcockts Ethan Miller


Skill Level Easy

Cuisine American

Makes 4 Portions

Diet Facts Low Carbohydrate

What You Need

Egg Base

01 8 large eggs
02 1/2 cup plain nonfat or 2% Greek yogurt
03 1/4 cup whole milk
04 1/2 teaspoon kosher salt
05 1/4 teaspoon freshly ground black pepper

Pizza Roll Filling

01 3/4 cup mini pepperoni slices
02 1 cup shredded mozzarella cheese
03 1/4 cup grated Parmesan cheese
04 1/2 cup pizza sauce
05 1/4 cup diced red or green bell pepper
06 1/4 cup finely diced red onion
07 1/2 teaspoon dried Italian herbs

Directions

Step 01

Prepare Muffin Tin: Preheat oven to 375°F. Lightly grease a 12-cup muffin tin with nonstick spray or oil.

Step 02

Create Egg Mixture: In a large bowl, whisk together eggs, Greek yogurt, milk, salt, and pepper until smooth and well combined.

Step 03

Combine Filling Ingredients: In a separate bowl, mix mini pepperoni, mozzarella, Parmesan, pizza sauce, bell pepper, red onion, and Italian herbs.

Step 04

Distribute Filling: Divide the pizza roll filling evenly among the muffin cups.

Step 05

Add Egg Mixture: Pour the egg mixture over the filling in each muffin cup, filling each approximately 3/4 full.

Step 06

Mix Filling and Egg: Gently stir each cup with a fork to distribute the filling throughout the egg base.

Step 07

Bake Frittatas: Bake for 18 to 22 minutes, until the frittatas are puffed, set, and lightly golden on top.

Step 08

Cool and Remove: Let cool in the tin for 5 minutes, then run a knife around the edges and carefully remove. Serve warm.

Tools Needed

  • 12-cup muffin tin
  • Mixing bowls
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy Details

Review all components for allergens and reach out to a health expert if needed.
  • Contains eggs
  • Contains milk and dairy products including Greek yogurt and cheese
  • May contain gluten if pizza sauce contains gluten
  • Check pepperoni and pizza sauce labels for gluten and other allergens

Nutrition Details (each serving)

Nutrition details are just for reference and can't replace professional medical counsel.
  • Energy (Calories): 120
  • Fats: 7 g
  • Carbohydrates: 3 g
  • Proteins: 10 g